Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs3909255	1.00[EUR][1000 genomes]
rs57293846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57474922	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57992049	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58184281	1.00[EUR][1000 genomes]
rs60296005	1.00[EUR][1000 genomes]
rs60574743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60859572	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61209800	1.00[EUR][1000 genomes]
rs7028775	1.00[EUR][1000 genomes]
rs7036040	1.00[EUR][1000 genomes]
rs7042611	1.00[EUR][1000 genomes]
rs73516288	1.00[EUR][1000 genomes]
rs73517134	1.00[EUR][1000 genomes]
rs73517146	1.00[EUR][1000 genomes]
rs73517153	1.00[EUR][1000 genomes]
rs73518256	1.00[EUR][1000 genomes]
rs73518290	1.00[EUR][1000 genomes]
rs73653403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653404	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653406	1.00[EUR][1000 genomes]
rs73653435	1.00[EUR][1000 genomes]
rs73653436	1.00[EUR][1000 genomes]
rs73654349	1.00[EUR][1000 genomes]
rs73654365	1.00[EUR][1000 genomes]
rs73654369	1.00[EUR][1000 genomes]
rs73654372	1.00[EUR][1000 genomes]
rs73654793	1.00[EUR][1000 genomes]
rs73654794	1.00[EUR][1000 genomes]
rs73654796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7853152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3426132	chr9:96782446-96794518	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96780800-96788400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:96782200-96788600	Weak transcription	Esophagus	oesophagus

Quick Search: