Variant report

Variant	rs73655584
Chromosome Location	chr9:103283101-103283102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103281981..103284118-chr9:103285879..103288033,2	MCF-7	breast:
2	chr9:103282396..103285475-chr9:103285908..103289146,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12003523	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17741842	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17741914	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17741974	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17742650	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17814243	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17814768	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17814828	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17815616	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1930238	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1970632	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2417179	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34400489	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3983768	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58407864	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61001412	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7033848	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7033969	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7041189	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7041892	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7042792	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73655579	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73655582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73655588	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73655590	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73657324	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7861317	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7862727	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7865385	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7866623	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103255600-103301600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:103256200-103287400	Weak transcription	HSMMtube	muscle
3	chr9:103257000-103289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:103258600-103296400	Weak transcription	Brain Anterior Caudate	brain
5	chr9:103260800-103287200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:103261200-103287600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
8	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
9	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
10	chr9:103269400-103287000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:103270000-103289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:103270200-103287200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:103270800-103290000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:103272600-103307000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:103272800-103283600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:103272800-103285400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:103273000-103285200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:103273000-103303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:103273200-103283800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:103273400-103289400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:103273600-103287200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
23	chr9:103273800-103283600	Weak transcription	Fetal Brain Female	brain
24	chr9:103273800-103287200	Weak transcription	Brain Germinal Matrix	brain
25	chr9:103274400-103289400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:103278000-103287800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:103278200-103289600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr9:103278400-103286000	Weak transcription	Fetal Lung	lung
29	chr9:103278400-103288200	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr9:103278400-103306400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
32	chr9:103278600-103287000	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:103278800-103288000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:103279000-103287600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:103279600-103312000	Weak transcription	HSMM	muscle
36	chr9:103280800-103296200	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:103281000-103283600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:103281200-103283200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:103282200-103283400	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr9:103282200-103286600	Weak transcription	Brain Substantia Nigra	brain
41	chr9:103282400-103283800	Enhancers	Brain Angular Gyrus	brain

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