Variant report

Variant	rs73655588
Chromosome Location	chr9:103299469-103299470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:28123556..28125062-chr9:103298490..103300934,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10465149	0.80[EUR][1000 genomes]
rs12003523	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17741842	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17741914	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17741974	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17742650	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17814243	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17814768	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17814828	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17815616	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1930237	0.80[EUR][1000 genomes]
rs1930238	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1970632	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2417179	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34400489	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3983768	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58407864	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59565932	0.80[EUR][1000 genomes]
rs61001412	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7033848	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7033969	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7041189	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7041892	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7042792	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73655579	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73655582	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73655584	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73655586	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655590	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73657324	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7861317	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7862727	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7865385	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7866623	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103255600-103301600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
3	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
4	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
5	chr9:103272600-103307000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:103273000-103303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
8	chr9:103278400-103306400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
10	chr9:103279600-103312000	Weak transcription	HSMM	muscle
11	chr9:103289800-103299800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:103289800-103300600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:103289800-103301000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:103289800-103301200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:103289800-103301400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:103289800-103301400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:103290000-103299600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:103290000-103301200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:103290000-103305200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:103290000-103306400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:103290200-103300800	Weak transcription	Fetal Brain Female	brain
22	chr9:103290400-103301200	Weak transcription	Fetal Stomach	stomach
23	chr9:103290400-103301600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:103290400-103302200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:103290400-103304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:103295600-103303200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:103296000-103300200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:103296400-103302200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:103296400-103304800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:103296800-103316600	Weak transcription	HSMMtube	muscle
31	chr9:103297000-103302000	Weak transcription	Brain Germinal Matrix	brain
32	chr9:103297000-103306400	Weak transcription	Brain Substantia Nigra	brain
33	chr9:103297000-103312800	Weak transcription	Brain Anterior Caudate	brain
34	chr9:103297200-103301600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr9:103297200-103306800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:103297200-103307200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:103297400-103307200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:103297400-103312000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:103297800-103307000	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:103298400-103306600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr9:103298800-103302400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:103299000-103299800	Enhancers	Liver	Liver

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