Variant report

Variant	rs73656529
Chromosome Location	chr9:98513625-98513626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10114354	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341752	1.00[EUR][1000 genomes]
rs28395181	1.00[EUR][1000 genomes]
rs28510993	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv3339519	chr9:98512656-98515504	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3506859	chr9:98513056-98515529	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3506860	chr9:98513056-98515529	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3438788	chr9:98513431-98514979	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98510400-98514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98511600-98514000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:98511800-98514000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr9:98511800-98514000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:98511800-98514000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr9:98512000-98514200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:98512200-98513800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr9:98512200-98515800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:98512400-98513800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:98513400-98513800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:98513400-98515600	Weak transcription	HepG2	liver
12	chr9:98513600-98513800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr9:98513600-98514000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:98513600-98514400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr9:98513600-98514800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr9:98513600-98516400	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links