Variant report

Variant	rs28510993
Chromosome Location	chr9:98515188-98515189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10114354	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10122291	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12341752	1.00[EUR][1000 genomes]
rs28395181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73656529	1.00[EUR][1000 genomes]
rs7848819	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv3339519	chr9:98512656-98515504	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3506859	chr9:98513056-98515529	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3506860	chr9:98513056-98515529	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98512200-98515800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:98513400-98515600	Weak transcription	HepG2	liver
3	chr9:98513600-98516400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:98514200-98515200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr9:98514200-98515200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:98514200-98515200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:98514200-98515200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr9:98514200-98515400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr9:98514200-98515400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr9:98514200-98515400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr9:98514400-98515200	Bivalent Enhancer	Adipose Nuclei	Adipose
12	chr9:98514400-98515200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr9:98514400-98515200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr9:98514400-98515800	Enhancers	Fetal Lung	lung
15	chr9:98514600-98515200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:98514600-98515200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:98514600-98515200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:98514600-98515200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr9:98514600-98515200	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr9:98514600-98515200	Bivalent Enhancer	Fetal Stomach	stomach
21	chr9:98514600-98516000	Weak transcription	Pancreas	Pancrea
22	chr9:98514800-98515200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
23	chr9:98514800-98515200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:98514800-98515200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:98514800-98515200	Enhancers	Right Atrium	heart
26	chr9:98514800-98515400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
27	chr9:98514800-98515600	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:98514800-98515600	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:98514800-98516000	Weak transcription	Right Ventricle	heart
30	chr9:98514800-98516600	Enhancers	Colonic Mucosa	Colon
31	chr9:98514800-98516800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:98514800-98519000	Enhancers	Ovary	ovary
33	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:98515000-98515200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:98515000-98515200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:98515000-98515400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr9:98515000-98516000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:98515000-98516600	Weak transcription	Spleen	Spleen

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