Variant report

Variant	rs7848819
Chromosome Location	chr9:98522091-98522092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTCH1-3	chr9:98522004-98522118	ENSG00000175611
2	lnc-PTCH1-3	chr9:98522004-98522118	ENSG00000175611.7
3	lnc-PTCH1-3	chr9:98522004-98522118	NONHSAT133390

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28395181	0.84[ASN][1000 genomes]
rs28510993	0.84[ASN][1000 genomes]
rs7030591	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:98516600-98527200	Weak transcription	Fetal Intestine Large	intestine
3	chr9:98517600-98522400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:98518200-98522200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:98518200-98526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:98518200-98528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:98519600-98523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:98519800-98526400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:98520000-98523200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:98520000-98523200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:98520000-98523200	Weak transcription	Fetal Lung	lung
12	chr9:98520000-98526200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:98520000-98526200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:98520000-98526200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:98520000-98526200	Weak transcription	HepG2	liver
16	chr9:98520000-98527200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:98520200-98523200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:98520200-98523400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:98520400-98523000	Weak transcription	Fetal Stomach	stomach
20	chr9:98520800-98524800	Weak transcription	GM12878-XiMat	blood
21	chr9:98521800-98526400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:98522000-98522800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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