Variant report

Variant	rs73656544
Chromosome Location	chr9:98565443-98565444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98563811..98565847-chr9:98577723..98580063,2	MCF-7	breast:
2	chr9:98540353..98542848-chr9:98564326..98568031,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10983321	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10988581	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10988804	0.84[EUR][1000 genomes]
rs11787559	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11790370	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11790491	0.83[EUR][1000 genomes]
rs11793298	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11794054	0.84[EUR][1000 genomes]
rs12683634	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12685221	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12686457	0.81[EUR][1000 genomes]
rs1360064	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16910257	0.88[AFR][1000 genomes]
rs16910262	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16910296	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16910298	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16910418	0.82[EUR][1000 genomes]
rs1831228	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1999023	0.82[EUR][1000 genomes]
rs2026032	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2069053	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34533243	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3780574	0.82[EUR][1000 genomes]
rs4532708	0.82[EUR][1000 genomes]
rs4742775	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4742781	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4743372	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743418	0.84[EUR][1000 genomes]
rs4743436	0.82[EUR][1000 genomes]
rs55758100	0.82[AFR][1000 genomes]
rs7048414	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73536517	0.84[EUR][1000 genomes]
rs7868270	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73656544	LINC00476	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98548400-98578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98557400-98577200	Weak transcription	Pancreas	Pancrea
3	chr9:98564400-98568600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:98565000-98569400	Weak transcription	HUVEC	blood vessel

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