Variant report

Variant	rs73656824
Chromosome Location	chr9:100326156-100326157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100324933..100327545-chr9:100329067..100331867,3	MCF-7	breast:
2	chr9:100319150..100321068-chr9:100324699..100328167,3	K562	blood:
3	chr9:100262480..100265797-chr9:100324164..100327795,3	K562	blood:
4	chr9:100316877..100321720-chr9:100323488..100327192,5	K562	blood:
5	chr9:100324071..100326251-chr9:100329455..100331958,2	K562	blood:
6	chr9:100264297..100266500-chr9:100324927..100326493,2	K562	blood:

Variant related genes	Relation type
ENSG00000136842	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56350461	1.00[AMR][1000 genomes]
rs61689291	1.00[AMR][1000 genomes]
rs61753637	1.00[AMR][1000 genomes]
rs73656823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656825	1.00[AMR][1000 genomes]
rs73656826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100315600-100326200	Weak transcription	Esophagus	oesophagus
2	chr9:100319200-100327400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:100320000-100326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:100320000-100326200	Weak transcription	Pancreas	Pancrea
5	chr9:100320000-100326200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:100320000-100326600	Weak transcription	Gastric	stomach
7	chr9:100320400-100326400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:100321600-100326400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:100321600-100331400	Weak transcription	Liver	Liver
10	chr9:100321800-100326200	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:100323200-100326200	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:100323200-100327200	Enhancers	Left Ventricle	heart
13	chr9:100323200-100327400	Enhancers	Right Ventricle	heart
14	chr9:100323600-100326400	Weak transcription	HSMMtube	muscle
15	chr9:100324000-100327600	Genic enhancers	Ovary	ovary
16	chr9:100324200-100326200	Enhancers	Brain Germinal Matrix	brain
17	chr9:100324200-100327400	Weak transcription	GM12878-XiMat	blood
18	chr9:100324200-100333200	Weak transcription	Spleen	Spleen
19	chr9:100324400-100326600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:100324400-100326800	Genic enhancers	Stomach Smooth Muscle	stomach
21	chr9:100324400-100328200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:100324400-100329400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:100324600-100326400	Enhancers	Brain Angular Gyrus	brain
24	chr9:100324600-100326400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:100324800-100326400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:100324800-100326400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr9:100324800-100326600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:100324800-100327800	Enhancers	Fetal Muscle Trunk	muscle
29	chr9:100325000-100326400	Weak transcription	K562	blood
30	chr9:100325200-100326200	Enhancers	Brain Anterior Caudate	brain
31	chr9:100325400-100326200	Enhancers	Adipose Nuclei	Adipose
32	chr9:100325400-100326400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:100325400-100326600	Enhancers	Fetal Brain Female	brain
34	chr9:100325400-100326600	Enhancers	Fetal Muscle Leg	muscle
35	chr9:100325400-100326800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:100325600-100326400	Weak transcription	Psoas Muscle	Psoas
37	chr9:100325600-100327000	Enhancers	Aorta	Aorta
38	chr9:100325600-100327200	Enhancers	HUVEC	blood vessel
39	chr9:100325600-100327600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr9:100325800-100327000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr9:100325800-100327200	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr9:100325800-100327200	Enhancers	Right Atrium	heart
43	chr9:100325800-100327400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:100325800-100327400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:100325800-100327600	Enhancers	Fetal Heart	heart
46	chr9:100326000-100326200	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr9:100326000-100327000	Enhancers	Stomach Mucosa	stomach
48	chr9:100326000-100327200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:100326000-100327200	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr9:100326000-100327200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links