Variant report

Variant	rs7365902
Chromosome Location	chr1:56800414-56800415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10493203	0.86[ASN][1000 genomes]
rs10493204	0.88[ASN][1000 genomes]
rs11206790	1.00[ASN][1000 genomes]
rs12731002	0.88[ASN][1000 genomes]
rs12734287	0.88[ASN][1000 genomes]
rs12739422	0.88[ASN][1000 genomes]
rs12756361	0.88[ASN][1000 genomes]
rs12759658	0.88[ASN][1000 genomes]
rs17113726	0.88[ASN][1000 genomes]
rs17113749	0.88[ASN][1000 genomes]
rs17113759	1.00[ASN][1000 genomes]
rs2991267	1.00[AFR][1000 genomes]
rs3005914	1.00[ASN][1000 genomes]
rs3005915	0.80[ASN][1000 genomes]
rs34290061	1.00[ASN][1000 genomes]
rs34349805	0.88[ASN][1000 genomes]
rs34897038	0.94[ASN][1000 genomes]
rs34980788	0.88[ASN][1000 genomes]
rs35476561	0.88[ASN][1000 genomes]
rs3929899	0.94[ASN][1000 genomes]
rs4534430	1.00[AFR][1000 genomes]
rs4912418	1.00[AFR][1000 genomes]
rs71639717	0.85[ASN][1000 genomes]
rs71639718	0.88[ASN][1000 genomes]
rs71639720	0.94[ASN][1000 genomes]
rs71639721	0.94[ASN][1000 genomes]
rs71639722	1.00[ASN][1000 genomes]
rs7525535	1.00[ASN][1000 genomes]
rs9786996	1.00[ASN][1000 genomes]
rs9787125	1.00[ASN][1000 genomes]
rs9787375	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1015037	chr1:56784322-56814739	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56787000-56805600	Weak transcription	Left Ventricle	heart
2	chr1:56787200-56800600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
4	chr1:56797000-56800800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:56797200-56800800	Weak transcription	Psoas Muscle	Psoas
6	chr1:56797200-56803000	Weak transcription	NHLF	lung
7	chr1:56797400-56800800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:56797800-56805600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:56798200-56802400	Weak transcription	NHDF-Ad	bronchial
10	chr1:56798400-56807800	Weak transcription	Fetal Intestine Small	intestine
11	chr1:56799200-56804200	Enhancers	Placenta	Placenta
12	chr1:56799800-56800800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:56800000-56803600	Weak transcription	HepG2	liver
14	chr1:56800000-56805600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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