Variant report

Variant	rs73662268
Chromosome Location	chr8:8856233-8856234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr8:8856052-8856285	GM12878	blood:	n/a	n/a
2	MXI1	chr8:8856163-8856363	GM12878	blood:	n/a	n/a
3	BHLHE40	chr8:8856121-8856342	GM12878	blood:	n/a	n/a
4	EBF1	chr8:8855942-8856282	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8846981..8849867-chr8:8855018..8857394,2	K562	blood:

Variant related genes	Relation type
ERI1	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56014185	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57915239	1.00[AMR][1000 genomes]
rs58957416	1.00[AMR][1000 genomes]
rs59294496	1.00[AMR][1000 genomes]
rs59472758	1.00[AMR][1000 genomes]
rs60082781	1.00[AMR][1000 genomes]
rs60519586	1.00[AMR][1000 genomes]
rs73662204	1.00[AMR][1000 genomes]
rs73662206	1.00[AMR][1000 genomes]
rs73662207	1.00[AMR][1000 genomes]
rs73662208	1.00[AMR][1000 genomes]
rs73662250	1.00[AMR][1000 genomes]
rs73662251	1.00[AMR][1000 genomes]
rs73662252	1.00[AMR][1000 genomes]
rs73662258	1.00[AMR][1000 genomes]
rs73662259	1.00[AMR][1000 genomes]
rs73662260	1.00[AMR][1000 genomes]
rs73662261	1.00[AMR][1000 genomes]
rs73662262	1.00[AMR][1000 genomes]
rs73662265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662266	1.00[AMR][1000 genomes]
rs73662267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662269	1.00[AMR][1000 genomes]
rs73662270	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662271	1.00[AMR][1000 genomes]
rs73662272	1.00[AMR][1000 genomes]
rs73662273	1.00[AMR][1000 genomes]
rs73662274	1.00[AMR][1000 genomes]
rs73662275	1.00[AMR][1000 genomes]
rs73662276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv610205	chr8:8799111-8891644	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8846600-8859800	Weak transcription	Brain Anterior Caudate	brain
2	chr8:8853000-8857000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:8853000-8858800	Weak transcription	K562	blood
4	chr8:8853200-8859600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:8853200-8859600	Weak transcription	A549	lung
6	chr8:8853200-8859600	Weak transcription	GM12878-XiMat	blood
7	chr8:8853200-8859600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:8854000-8859800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:8856000-8856400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr8:8856200-8856400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:8856200-8856400	Enhancers	HepG2	liver
12	chr8:8856200-8859800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr8:8856200-8859800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links