Variant report

Variant	rs73662207
Chromosome Location	chr8:8746932-8746933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8640474..8642635-chr8:8745832..8748288,2	MCF-7	breast:
2	chr8:8733670..8736303-chr8:8745304..8747711,2	K562	blood:
3	chr8:8738833..8741293-chr8:8745302..8747462,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11989848	1.00[AMR][1000 genomes]
rs56014185	1.00[AMR][1000 genomes]
rs57915239	1.00[AMR][1000 genomes]
rs58957416	1.00[AMR][1000 genomes]
rs59294496	1.00[AMR][1000 genomes]
rs59472758	1.00[AMR][1000 genomes]
rs60082781	1.00[AMR][1000 genomes]
rs60519586	1.00[AMR][1000 genomes]
rs73662204	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662205	1.00[AFR][1000 genomes]
rs73662206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662208	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662250	1.00[AMR][1000 genomes]
rs73662251	1.00[AMR][1000 genomes]
rs73662252	1.00[AMR][1000 genomes]
rs73662258	1.00[AMR][1000 genomes]
rs73662259	1.00[AMR][1000 genomes]
rs73662260	1.00[AMR][1000 genomes]
rs73662261	1.00[AMR][1000 genomes]
rs73662262	1.00[AMR][1000 genomes]
rs73662265	1.00[AMR][1000 genomes]
rs73662266	1.00[AMR][1000 genomes]
rs73662267	1.00[AMR][1000 genomes]
rs73662268	1.00[AMR][1000 genomes]
rs73662269	1.00[AMR][1000 genomes]
rs73662270	1.00[AMR][1000 genomes]
rs73662271	1.00[AMR][1000 genomes]
rs73662272	1.00[AMR][1000 genomes]
rs73662273	1.00[AMR][1000 genomes]
rs73662274	1.00[AMR][1000 genomes]
rs73662275	1.00[AMR][1000 genomes]
rs73662276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	esv2757257	chr8:8707639-8747894	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759591	chr8:8707639-8747894	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv818595	chr8:8712895-8752684	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv610190	chr8:8744240-8766881	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv1803827	chr8:8745741-8758058	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	esv1825921	chr8:8745741-8758058	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv1835162	chr8:8745741-8758058	Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8730800-8747600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:8742600-8747200	Weak transcription	Spleen	Spleen
3	chr8:8743200-8748200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:8744000-8747600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:8745000-8747000	Active TSS	Fetal Brain Male	brain
6	chr8:8745200-8747000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:8745200-8747200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr8:8745200-8747200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:8745200-8747200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr8:8745200-8747200	Active TSS	NHLF	lung
11	chr8:8745200-8747800	Active TSS	Brain Hippocampus Middle	brain
12	chr8:8745200-8747800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:8745200-8748600	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:8745200-8749000	Active TSS	Brain Substantia Nigra	brain
15	chr8:8745200-8749200	Active TSS	Brain Angular Gyrus	brain
16	chr8:8745200-8749200	Active TSS	Brain Cingulate Gyrus	brain
17	chr8:8745200-8750200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr8:8745400-8747000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:8745400-8747000	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr8:8745400-8747200	Active TSS	Right Ventricle	heart
21	chr8:8745400-8747600	Active TSS	Aorta	Aorta
22	chr8:8745400-8747800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:8745400-8748200	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr8:8745400-8748200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:8745600-8747200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr8:8745600-8747200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:8745600-8747200	Active TSS	Ovary	ovary
28	chr8:8745600-8747200	Active TSS	Right Atrium	heart
29	chr8:8745600-8747400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:8745600-8747400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr8:8745600-8747400	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr8:8745600-8747600	Active TSS	Left Ventricle	heart
33	chr8:8745600-8747600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr8:8745600-8747800	Enhancers	Primary B cells from cord blood	blood
35	chr8:8745600-8748000	Flanking Active TSS	Liver	Liver
36	chr8:8745600-8748200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:8745600-8748200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
38	chr8:8745600-8748200	Flanking Active TSS	Fetal Heart	heart
39	chr8:8745800-8747600	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr8:8745800-8748000	Active TSS	Brain Anterior Caudate	brain
41	chr8:8745800-8748200	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr8:8745800-8750600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:8746000-8747000	Active TSS	Brain Germinal Matrix	brain
44	chr8:8746000-8747200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:8746000-8747200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:8746000-8747200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr8:8746000-8747200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:8746000-8747200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr8:8746000-8747200	Active TSS	Placenta	Placenta
50	chr8:8746000-8747200	Active TSS	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links