Variant report

Variant	rs73662282
Chromosome Location	chr8:8891991-8891992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8890241..8892505-chr8:9006726..9010652,3	MCF-7	breast:
2	chr8:8886740..8888994-chr8:8890137..8892927,2	K562	blood:
3	chr8:8891184..8893104-chr8:9006751..9008501,2	K562	blood:

Variant related genes	Relation type
ENSG00000173281	Chromatin interaction
ENSG00000253426	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10091950	1.00[AMR][1000 genomes]
rs10100756	1.00[AMR][1000 genomes]
rs10107835	1.00[AMR][1000 genomes]
rs10107838	1.00[AMR][1000 genomes]
rs10113601	1.00[AMR][1000 genomes]
rs28500648	1.00[AMR][1000 genomes]
rs28587309	1.00[AMR][1000 genomes]
rs28692621	1.00[AMR][1000 genomes]
rs34911286	1.00[AMR][1000 genomes]
rs57169303	1.00[AMR][1000 genomes]
rs59830293	1.00[AMR][1000 genomes]
rs59978283	1.00[AMR][1000 genomes]
rs60317720	1.00[AMR][1000 genomes]
rs61240251	1.00[AMR][1000 genomes]
rs73662248	1.00[AMR][1000 genomes]
rs73662280	1.00[AMR][1000 genomes]
rs73662281	1.00[AMR][1000 genomes]
rs73662283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662284	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662285	1.00[AMR][1000 genomes]
rs73662287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8861200-8892400	Weak transcription	Aorta	Aorta
2	chr8:8861400-8907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:8861800-8892000	Weak transcription	Brain Anterior Caudate	brain
4	chr8:8861800-8892200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:8861800-8892200	Weak transcription	Ovary	ovary
6	chr8:8861800-8893800	Weak transcription	Fetal Brain Male	brain
7	chr8:8861800-8897800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:8861800-8915600	Weak transcription	Pancreas	Pancrea
9	chr8:8870600-8892200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:8871200-8900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:8871400-8892800	Weak transcription	HSMMtube	muscle
12	chr8:8871800-8894400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:8875200-8897200	Weak transcription	Gastric	stomach
14	chr8:8875400-8892600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:8875400-8894400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:8875400-8897000	Weak transcription	Lung	lung
17	chr8:8875400-8901200	Weak transcription	Thymus	Thymus
18	chr8:8875800-8892200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr8:8876400-8898000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:8877000-8894600	Weak transcription	HMEC	breast
21	chr8:8877000-8895600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:8877000-8903400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:8877200-8895400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:8879200-8892600	Weak transcription	Osteobl	bone
25	chr8:8879400-8894200	Weak transcription	HepG2	liver
26	chr8:8881000-8900400	Weak transcription	NH-A	brain
27	chr8:8881200-8892000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:8882200-8896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:8882600-8894600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr8:8882600-8894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:8883000-8893200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr8:8883200-8898400	Weak transcription	Fetal Kidney	kidney
33	chr8:8883600-8902400	Weak transcription	Adipose Nuclei	Adipose
34	chr8:8883800-8892200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:8883800-8893800	Weak transcription	NHDF-Ad	bronchial
36	chr8:8883800-8895400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:8883800-8897800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:8883800-8906000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr8:8884000-8892400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:8884000-8894400	Weak transcription	Fetal Heart	heart
41	chr8:8884000-8895000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr8:8884000-8900200	Weak transcription	Left Ventricle	heart
43	chr8:8884000-8906200	Weak transcription	Psoas Muscle	Psoas
44	chr8:8884200-8892000	Weak transcription	NHLF	lung
45	chr8:8884200-8893600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr8:8884600-8894800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:8884600-8895200	Weak transcription	Liver	Liver
48	chr8:8885800-8895800	Weak transcription	Fetal Lung	lung
49	chr8:8886000-8892400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr8:8886600-8892600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links