Variant report

Variant	rs73662284
Chromosome Location	chr8:8899986-8899987
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10091950	1.00[AMR][1000 genomes]
rs10100756	1.00[AMR][1000 genomes]
rs10107835	1.00[AMR][1000 genomes]
rs10107838	1.00[AMR][1000 genomes]
rs10113601	1.00[AMR][1000 genomes]
rs28500648	1.00[AMR][1000 genomes]
rs28587309	1.00[AMR][1000 genomes]
rs28692621	1.00[AMR][1000 genomes]
rs34911286	1.00[AMR][1000 genomes]
rs57169303	1.00[AMR][1000 genomes]
rs59830293	1.00[AMR][1000 genomes]
rs59978283	1.00[AMR][1000 genomes]
rs60317720	1.00[AMR][1000 genomes]
rs61240251	1.00[AMR][1000 genomes]
rs73662248	1.00[AMR][1000 genomes]
rs73662280	1.00[AMR][1000 genomes]
rs73662281	1.00[AMR][1000 genomes]
rs73662282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662285	1.00[AMR][1000 genomes]
rs73662287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8861400-8907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:8861800-8915600	Weak transcription	Pancreas	Pancrea
3	chr8:8871200-8900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:8875400-8901200	Weak transcription	Thymus	Thymus
5	chr8:8877000-8903400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:8881000-8900400	Weak transcription	NH-A	brain
7	chr8:8883600-8902400	Weak transcription	Adipose Nuclei	Adipose
8	chr8:8883800-8906000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:8884000-8900200	Weak transcription	Left Ventricle	heart
10	chr8:8884000-8906200	Weak transcription	Psoas Muscle	Psoas
11	chr8:8888400-8910800	Weak transcription	Hela-S3	cervix
12	chr8:8891000-8914800	Weak transcription	Fetal Stomach	stomach
13	chr8:8891400-8915200	Weak transcription	K562	blood
14	chr8:8892000-8901800	Weak transcription	Primary B cells from cord blood	blood
15	chr8:8893800-8913800	Weak transcription	Primary T cells from cord blood	blood
16	chr8:8897600-8900200	Enhancers	Placenta	Placenta
17	chr8:8897800-8902400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr8:8898000-8902000	Weak transcription	GM12878-XiMat	blood
19	chr8:8898200-8900000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:8898600-8900000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:8898600-8900000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr8:8898600-8900200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:8898600-8900200	Weak transcription	NHEK	skin
24	chr8:8898600-8900400	Weak transcription	HMEC	breast
25	chr8:8898600-8905200	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:8898600-8908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr8:8898800-8900200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:8898800-8903800	Weak transcription	Fetal Heart	heart
29	chr8:8898800-8907200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr8:8899000-8919200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:8899200-8900400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr8:8899200-8900400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:8899800-8900000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:8899800-8900000	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr8:8899800-8902600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:8899800-8907200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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