Variant report

Variant	rs73662821
Chromosome Location	chr8:10209733-10209734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10205661..10208295-chr8:10208819..10211116,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10903324	1.00[AMR][1000 genomes]
rs60158398	1.00[AMR][1000 genomes]
rs7000550	1.00[AMR][1000 genomes]
rs73662820	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv1018940	chr8:10200886-10220973	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10193000-10215400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
4	chr8:10193600-10220400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:10196800-10214200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:10196800-10228000	Weak transcription	Liver	Liver
7	chr8:10201800-10221800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:10204000-10219800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:10204200-10210400	Weak transcription	Right Atrium	heart
10	chr8:10204400-10221800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:10206000-10213600	Enhancers	Fetal Brain Male	brain
12	chr8:10206200-10222800	Weak transcription	Aorta	Aorta
13	chr8:10206400-10209800	Enhancers	Fetal Brain Female	brain
14	chr8:10206400-10210200	Enhancers	Primary T cells from cord blood	blood
15	chr8:10206600-10209800	Weak transcription	Fetal Heart	heart
16	chr8:10206800-10214600	Enhancers	Fetal Thymus	thymus
17	chr8:10207000-10210400	Weak transcription	Brain Germinal Matrix	brain
18	chr8:10207000-10210800	Enhancers	Fetal Muscle Trunk	muscle
19	chr8:10207000-10211200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:10207400-10210600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr8:10207400-10211200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:10207400-10211200	Enhancers	Fetal Muscle Leg	muscle
23	chr8:10208000-10213000	Weak transcription	Spleen	Spleen
24	chr8:10208200-10212000	Enhancers	Thymus	Thymus
25	chr8:10208400-10210400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:10208400-10210800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:10208400-10211000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:10208400-10211400	Enhancers	Primary T cells fromperipheralblood	blood
29	chr8:10208400-10211400	Enhancers	HSMMtube	muscle
30	chr8:10208400-10212000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr8:10208400-10218200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr8:10208600-10209800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:10208600-10210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:10208600-10210400	Weak transcription	NHEK	skin
35	chr8:10208600-10210800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:10208800-10211400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:10208800-10220400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr8:10209000-10210400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:10209000-10211400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr8:10209000-10211800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr8:10209000-10212800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr8:10209200-10212000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr8:10209200-10213600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:10209400-10210200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr8:10209400-10210600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr8:10209400-10211800	Enhancers	HSMM	muscle
47	chr8:10209400-10220600	Weak transcription	Brain Angular Gyrus	brain
48	chr8:10209600-10210400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:10209600-10210600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:10209600-10210600	Enhancers	Left Ventricle	heart

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