Variant report

Variant	rs73671413
Chromosome Location	chr8:34854586-34854587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57552951	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58825258	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60049681	1.00[AMR][1000 genomes]
rs73671416	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671418	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671601	1.00[AMR][1000 genomes]
rs73674242	0.85[AFR][1000 genomes]
rs73674243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2764070	chr8:34832017-34857556	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv428515	chr8:34849097-34862729	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34844400-34857400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:34853000-34864600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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