Variant report

Variant	rs73674242
Chromosome Location	chr8:34798796-34798797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55675742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55889790	1.00[AMR][1000 genomes]
rs56067427	1.00[AMR][1000 genomes]
rs56372043	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57184513	1.00[AMR][1000 genomes]
rs57185131	1.00[AMR][1000 genomes]
rs57416120	1.00[AMR][1000 genomes]
rs57667036	1.00[AMR][1000 genomes]
rs60856315	1.00[AMR][1000 genomes]
rs6468294	1.00[AMR][1000 genomes]
rs6983843	1.00[AMR][1000 genomes]
rs6984173	1.00[AMR][1000 genomes]
rs7001611	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671412	1.00[AMR][1000 genomes]
rs73671413	0.85[AFR][1000 genomes]
rs73671418	0.83[AFR][1000 genomes]
rs73671419	1.00[AMR][1000 genomes]
rs73674206	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674210	1.00[AMR][1000 genomes]
rs73674211	1.00[AMR][1000 genomes]
rs73674212	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674213	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674214	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674215	1.00[AMR][1000 genomes]
rs73674216	1.00[AMR][1000 genomes]
rs73674218	1.00[AMR][1000 genomes]
rs73674223	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674226	1.00[AMR][1000 genomes]
rs73674227	1.00[AMR][1000 genomes]
rs73674228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674229	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674230	1.00[AMR][1000 genomes]
rs73674233	1.00[AMR][1000 genomes]
rs73674234	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674235	1.00[AMR][1000 genomes]
rs73674236	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674243	0.89[AFR][1000 genomes]
rs7843768	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv517950	chr8:34797403-34803940	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34797200-34802000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:34797400-34802000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:34797400-34803800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:34798400-34798800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:34798400-34799000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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