Variant report

Variant	rs73674235
Chromosome Location	chr8:34778983-34778984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55675742	1.00[AMR][1000 genomes]
rs55889790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56067427	1.00[AMR][1000 genomes]
rs56372043	1.00[AMR][1000 genomes]
rs57184513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57185131	1.00[AMR][1000 genomes]
rs57416120	1.00[AMR][1000 genomes]
rs57667036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59784470	1.00[AFR][1000 genomes]
rs60856315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6468294	1.00[AMR][1000 genomes]
rs6983843	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6984173	1.00[AMR][1000 genomes]
rs7001611	1.00[AMR][1000 genomes]
rs73671412	1.00[AMR][1000 genomes]
rs73671419	1.00[AMR][1000 genomes]
rs73674206	1.00[AMR][1000 genomes]
rs73674210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674212	1.00[AMR][1000 genomes]
rs73674213	1.00[AMR][1000 genomes]
rs73674214	1.00[AMR][1000 genomes]
rs73674215	1.00[AMR][1000 genomes]
rs73674216	1.00[AMR][1000 genomes]
rs73674218	1.00[AMR][1000 genomes]
rs73674223	1.00[AMR][1000 genomes]
rs73674224	1.00[AMR][1000 genomes]
rs73674226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674227	1.00[AMR][1000 genomes]
rs73674228	1.00[AMR][1000 genomes]
rs73674229	1.00[AMR][1000 genomes]
rs73674230	1.00[AMR][1000 genomes]
rs73674233	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674234	1.00[AMR][1000 genomes]
rs73674236	1.00[AMR][1000 genomes]
rs73674242	1.00[AMR][1000 genomes]
rs7843768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34777800-34779600	Enhancers	Brain Germinal Matrix	brain
2	chr8:34778000-34779000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:34778000-34779200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:34778000-34779200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:34778000-34779200	Weak transcription	Fetal Brain Male	brain
6	chr8:34778000-34780400	Enhancers	Fetal Brain Female	brain
7	chr8:34778200-34779400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:34778600-34779200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:34778800-34779200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:34778800-34779400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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