Variant report

Variant	rs73671419
Chromosome Location	chr8:34869367-34869368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55675742	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55889790	1.00[AMR][1000 genomes]
rs56067427	1.00[AMR][1000 genomes]
rs56372043	1.00[AMR][1000 genomes]
rs57184513	1.00[AMR][1000 genomes]
rs57185131	1.00[AMR][1000 genomes]
rs57416120	1.00[AMR][1000 genomes]
rs57667036	1.00[AMR][1000 genomes]
rs60856315	1.00[AMR][1000 genomes]
rs6468294	1.00[AMR][1000 genomes]
rs6983843	1.00[AMR][1000 genomes]
rs6984173	1.00[AMR][1000 genomes]
rs7001611	1.00[AMR][1000 genomes]
rs73671412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674206	1.00[AMR][1000 genomes]
rs73674210	1.00[AMR][1000 genomes]
rs73674211	1.00[AMR][1000 genomes]
rs73674212	1.00[AMR][1000 genomes]
rs73674213	1.00[AMR][1000 genomes]
rs73674214	1.00[AMR][1000 genomes]
rs73674215	1.00[AMR][1000 genomes]
rs73674216	1.00[AMR][1000 genomes]
rs73674218	1.00[AMR][1000 genomes]
rs73674223	1.00[AMR][1000 genomes]
rs73674224	1.00[AMR][1000 genomes]
rs73674226	1.00[AMR][1000 genomes]
rs73674227	1.00[AMR][1000 genomes]
rs73674228	1.00[AMR][1000 genomes]
rs73674229	1.00[AMR][1000 genomes]
rs73674230	1.00[AMR][1000 genomes]
rs73674233	1.00[AMR][1000 genomes]
rs73674234	1.00[AMR][1000 genomes]
rs73674235	1.00[AMR][1000 genomes]
rs73674236	1.00[AMR][1000 genomes]
rs73674242	1.00[AMR][1000 genomes]
rs7843768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34862400-34871200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:34865800-34870800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:34865800-34871400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:34866000-34870800	Weak transcription	HMEC	breast
5	chr8:34869000-34871400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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