Variant report
Variant | rs55675742 |
---|---|
Chromosome Location | chr8:34806952-34806953 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs55889790 | 1.00[AMR][1000 genomes] |
rs56067427 | 1.00[AMR][1000 genomes] |
rs56372043 | 1.00[AMR][1000 genomes] |
rs57184513 | 1.00[AMR][1000 genomes] |
rs57185131 | 1.00[AMR][1000 genomes] |
rs57416120 | 1.00[AMR][1000 genomes] |
rs57667036 | 1.00[AMR][1000 genomes] |
rs60856315 | 1.00[AMR][1000 genomes] |
rs6468294 | 1.00[AMR][1000 genomes] |
rs6983843 | 1.00[AMR][1000 genomes] |
rs6984173 | 1.00[AMR][1000 genomes] |
rs7001611 | 1.00[AMR][1000 genomes] |
rs73671412 | 1.00[AMR][1000 genomes] |
rs73671419 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73674206 | 1.00[AMR][1000 genomes] |
rs73674210 | 1.00[AMR][1000 genomes] |
rs73674211 | 1.00[AMR][1000 genomes] |
rs73674212 | 1.00[AMR][1000 genomes] |
rs73674213 | 1.00[AMR][1000 genomes] |
rs73674214 | 1.00[AMR][1000 genomes] |
rs73674215 | 1.00[AMR][1000 genomes] |
rs73674216 | 1.00[AMR][1000 genomes] |
rs73674218 | 1.00[AMR][1000 genomes] |
rs73674223 | 1.00[AMR][1000 genomes] |
rs73674224 | 1.00[AMR][1000 genomes] |
rs73674226 | 1.00[AMR][1000 genomes] |
rs73674227 | 1.00[AMR][1000 genomes] |
rs73674228 | 1.00[AMR][1000 genomes] |
rs73674229 | 1.00[AMR][1000 genomes] |
rs73674230 | 1.00[AMR][1000 genomes] |
rs73674233 | 1.00[AMR][1000 genomes] |
rs73674234 | 1.00[AMR][1000 genomes] |
rs73674235 | 1.00[AMR][1000 genomes] |
rs73674236 | 1.00[AMR][1000 genomes] |
rs73674242 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73674243 | 0.84[AFR][1000 genomes] |
rs73674246 | 0.83[AFR][1000 genomes] |
rs7843768 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv890716 | chr8:34707436-34822797 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1017085 | chr8:34742896-35594241 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv539546 | chr8:34742896-35594241 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:34804400-34808200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
2 | chr8:34804800-34808200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |