Variant report

Variant	rs73671597
Chromosome Location	chr8:34673332-34673333
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16882913	1.00[AMR][1000 genomes]
rs59701735	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61642213	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671544	1.00[AMR][1000 genomes]
rs73671555	1.00[AMR][1000 genomes]
rs73671585	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671586	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671588	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671589	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671590	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671591	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671592	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671593	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671595	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73671600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7818196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890715	chr8:34568015-34700530	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv465635	chr8:34631970-34710118	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv610932	chr8:34631970-34710118	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv465636	chr8:34649550-34710118	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv610933	chr8:34649550-34710118	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv6148	chr8:34669644-34714096	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34673000-34673400	Strong transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:34673000-34673400	ZNF genes & repeats	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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