Variant report

Variant	rs73677517
Chromosome Location	chr8:51686276-51686277
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs56371879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57421197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59505893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59570820	0.94[AFR][1000 genomes]
rs73677507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677508	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677527	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677535	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677537	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677554	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677555	0.94[AFR][1000 genomes]
rs73677556	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678634	1.00[AMR][1000 genomes]
rs73678646	1.00[AMR][1000 genomes]
rs73678687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890874	chr8:51681031-51772697	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv890875	chr8:51681031-51780761	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51684800-51686800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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