Variant report

Variant	rs73678543
Chromosome Location	chr7:11036362-11036363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:11013342..11016641-chr7:11035559..11038666,3	MCF-7	breast:
2	chr7:11034938..11037740-chr7:11039775..11043561,3	K562	blood:
3	chr7:11024878..11026646-chr7:11036026..11038612,2	MCF-7	breast:
4	chr7:11022866..11024781-chr7:11035299..11037251,2	K562	blood:
5	chr7:11035549..11039203-chr7:11040306..11043561,4	K562	blood:

Variant related genes	Relation type
ENSG00000106443	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56400834	1.00[AFR][1000 genomes]
rs57327184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57337126	1.00[AMR][1000 genomes]
rs57622089	1.00[AMR][1000 genomes]
rs57841461	1.00[AMR][1000 genomes]
rs59807745	1.00[AMR][1000 genomes]
rs60185956	1.00[AMR][1000 genomes]
rs60450844	1.00[AMR][1000 genomes]
rs60879362	1.00[AMR][1000 genomes]
rs61302979	1.00[AMR][1000 genomes]
rs61707274	1.00[AMR][1000 genomes]
rs6949600	1.00[AMR][1000 genomes]
rs6967802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971440	1.00[AMR][1000 genomes]
rs6977077	1.00[AMR][1000 genomes]
rs73678568	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678575	1.00[AMR][1000 genomes]
rs7792307	1.00[AMR][1000 genomes]
rs7800938	1.00[AMR][1000 genomes]
rs7808367	1.00[AMR][1000 genomes]
rs7810668	1.00[AMR][1000 genomes]
rs7811647	1.00[AMR][1000 genomes]
rs7812031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv1030035	chr7:11027819-11256089	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11014200-11038600	Weak transcription	Small Intestine	intestine
2	chr7:11014600-11038600	Weak transcription	Psoas Muscle	Psoas
3	chr7:11014600-11045400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:11014600-11092000	Weak transcription	Colonic Mucosa	Colon
5	chr7:11014800-11039200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:11014800-11054200	Weak transcription	NHLF	lung
7	chr7:11014800-11075200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:11014800-11117400	Weak transcription	HSMMtube	muscle
9	chr7:11015000-11037400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:11015000-11037400	Weak transcription	NHEK	skin
11	chr7:11015000-11064000	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:11015200-11108200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:11016800-11057200	Weak transcription	Fetal Brain Male	brain
14	chr7:11017200-11076000	Weak transcription	HUVEC	blood vessel
15	chr7:11017800-11037200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:11018600-11063800	Weak transcription	Brain Angular Gyrus	brain
17	chr7:11020800-11037600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:11022800-11037600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:11022800-11044800	Weak transcription	Hela-S3	cervix
20	chr7:11022800-11071000	Weak transcription	Right Ventricle	heart
21	chr7:11023000-11038200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:11023000-11053600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr7:11023200-11076200	Weak transcription	NH-A	brain
24	chr7:11023600-11053600	Weak transcription	Fetal Kidney	kidney
25	chr7:11023800-11038800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:11026600-11037200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:11027800-11038800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:11028600-11037800	Weak transcription	Stomach Mucosa	stomach
29	chr7:11029200-11039400	Strong transcription	Dnd41	blood
30	chr7:11031600-11103800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:11032000-11036600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:11032200-11037200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:11032200-11037200	Strong transcription	Primary T cells from cord blood	blood
34	chr7:11032200-11037400	Strong transcription	Primary B cells from cord blood	blood
35	chr7:11032400-11036400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:11032400-11036600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr7:11032800-11036600	Weak transcription	HepG2	liver
38	chr7:11033200-11036400	Strong transcription	Left Ventricle	heart
39	chr7:11033200-11036600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:11033200-11038400	Weak transcription	GM12878-XiMat	blood
41	chr7:11033200-11053600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:11033400-11036600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
43	chr7:11033400-11036600	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr7:11033400-11036600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:11033400-11036600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
46	chr7:11033400-11036600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
47	chr7:11033400-11053600	Weak transcription	HSMM	muscle
48	chr7:11033600-11038600	Weak transcription	Osteobl	bone
49	chr7:11033800-11045600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:11033800-11053600	Weak transcription	Rectal Mucosa Donor 31	rectum

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