Variant report

Variant	rs73684653
Chromosome Location	chr7:19161710-19161711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:106)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:106 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:19161619-19162011	Hela-S3	cervix:	n/a	n/a
2	CTCF	chr7:19161692-19161878	ProgFib	skin:	n/a	n/a
3	CTCF	chr7:19161628-19161879	ECC-1	luminal epithelium:	n/a	n/a
4	STAT3	chr7:19161651-19161718	MCF10A-Er-Src	breast:	n/a	n/a
5	CTCF	chr7:19161692-19161904	GM12878	blood:	n/a	n/a
6	SMC3	chr7:19161617-19162011	Hela-S3	cervix:	n/a	n/a
7	SMC3	chr7:19161680-19161959	HepG2	liver:	n/a	n/a
8	RCOR1	chr7:19161679-19161736	HepG2	liver:	n/a	n/a
9	CTCF	chr7:19161674-19161911	MCF-7	breast:	n/a	n/a
10	CTCF	chr7:19161700-19161850	GM12801	blood:	n/a	n/a
11	CTCF	chr7:19161631-19161895	HepG2	liver:	n/a	n/a
12	CTCF	chr7:19161593-19162032	IMR90	lung:	n/a	n/a
13	RAD21	chr7:19161511-19162138	HCT-116	colon:	n/a	n/a
14	E2F4	chr7:19161663-19162096	MCF10A-Er-Src	breast:	n/a	n/a
15	RAD21	chr7:19161705-19161875	GM12878	blood:	n/a	n/a
16	CTCF	chr7:19161703-19161819	Fibrobl	skin:	n/a	n/a
17	CTCF	chr7:19161680-19161830	GM12864	blood:	n/a	n/a
18	CTCF	chr7:19161680-19161830	GM12872	blood:	n/a	n/a
19	CTCF	chr7:19161499-19161993	HCT-116	colon:	n/a	n/a
20	ZNF143	chr7:19161703-19161937	GM12878	blood:	n/a	n/a
21	CTCF	chr7:19161668-19161906	Gliobla	brain:	n/a	n/a
22	RAD21	chr7:19161553-19162013	HCT-116	colon:	n/a	n/a
23	MXI1	chr7:19143470-19162161	SK-N-SH	brain:	n/a	chr7:19158827-19158836 chr7:19158829-19158838 chr7:19158827-19158836
24	RAD21	chr7:19161602-19162017	SK-N-SH_RA	brain:	n/a	n/a
25	ZNF143	chr7:19161650-19161960	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr7:19161700-19161850	HFF-Myc	foreskin:	n/a	n/a
27	RAD21	chr7:19161564-19162094	A549	lung:	n/a	n/a
28	CTCF	chr7:19161700-19161850	HL-60	blood:	n/a	n/a
29	CTCF	chr7:19161700-19161850	HCT-116	colon:	n/a	n/a
30	CTCF	chr7:19161708-19161918	A549	lung:	n/a	n/a
31	STAT3	chr7:19161679-19161879	MCF10A-Er-Src	breast:	n/a	chr7:19161820-19161831
32	CTCF	chr7:19161660-19161810	NHEK	skin:	n/a	n/a
33	CTCF	chr7:19161700-19161850	NHLF	lung:	n/a	n/a
34	CTCF	chr7:19161700-19161850	GM12873	blood:	n/a	n/a
35	CTCF	chr7:19161668-19161922	A549	lung:	n/a	n/a
36	CTCF	chr7:19161700-19161850	HAc	cerebellar:	n/a	n/a
37	CTCF	chr7:19161680-19161905	Hela-S3	cervix:	n/a	n/a
38	CTCF	chr7:19161595-19161977	T-47D	breast:	n/a	n/a
39	RAD21	chr7:19161536-19162009	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr7:19161698-19161886	MCF-7	breast:	n/a	n/a
41	CTCF	chr7:19161700-19161850	HCM	heart:	n/a	n/a
42	SMC3	chr7:19161195-19162158	SK-N-SH	brain:	n/a	n/a
43	CTCF	chr7:19161621-19161933	ECC-1	luminal epithelium:	n/a	n/a
44	CTCF	chr7:19161680-19161830	GM12873	blood:	n/a	n/a
45	RAD21	chr7:19161639-19161949	A549	lung:	n/a	n/a
46	CTCF	chr7:19161673-19161935	LNCaP	prostate:	n/a	n/a
47	RAD21	chr7:19161577-19162062	ECC-1	luminal epithelium:	n/a	n/a
48	SMC3	chr7:19161653-19161879	K562	blood:	n/a	n/a
49	RAD21	chr7:19161701-19161924	HepG2	liver:	n/a	n/a
50	CTCF	chr7:19161669-19161924	LNCaP	prostate:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:19161360..19162323-chr7:19704757..19705725,5	MCF-7	breast:
2	chr7:19161356..19162289-chr7:19481424..19482541,6	MCF-7	breast:
3	chr7:19161315..19162333-chr7:19661177..19662063,3	MCF-7	breast:

No data

Variant related genes	Relation type
TWIST1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11973545	1.00[AMR][1000 genomes]
rs11975907	1.00[AMR][1000 genomes]
rs11978418	1.00[AMR][1000 genomes]
rs11983126	1.00[AMR][1000 genomes]
rs73684652	1.00[AMR][1000 genomes]
rs7779171	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538767	chr7:19150355-19163170	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028132	chr7:19150355-19172107	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv538768	chr7:19150355-19172107	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538771	chr7:19151576-19162140	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
8	nsv538774	chr7:19152455-19162140	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv538775	chr7:19152934-19162079	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	nsv1023268	chr7:19152934-19172246	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
11	nsv538776	chr7:19152934-19172246	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
12	nsv538780	chr7:19153407-19163309	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
13	nsv538782	chr7:19153408-19163310	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
14	nsv1034825	chr7:19153408-19172247	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
15	nsv538783	chr7:19153408-19172247	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
16	nsv538785	chr7:19153607-19163170	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19159400-19162200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:19159600-19161800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:19159600-19161800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:19161400-19161800	Bivalent Enhancer	HUVEC	blood vessel
5	chr7:19161400-19161800	Flanking Active TSS	NHDF-Ad	bronchial
6	chr7:19161600-19161800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr7:19161600-19161800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:19161600-19161800	Enhancers	Osteobl	bone
9	chr7:19161600-19162000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr7:19161600-19162000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links