Variant report

Variant	rs73684901
Chromosome Location	chr8:60060446-60060447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10089655	0.92[EUR][1000 genomes]
rs10097495	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110417	0.92[EUR][1000 genomes]
rs12334681	0.92[EUR][1000 genomes]
rs28662120	0.92[EUR][1000 genomes]
rs28723644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57738519	1.00[AMR][1000 genomes]
rs61183853	0.92[EUR][1000 genomes]
rs73684880	1.00[AMR][1000 genomes]
rs7822038	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60059400-60060800	Flanking Active TSS	GM12878-XiMat	blood
2	chr8:60059600-60062600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:60059800-60060800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:60059800-60060800	Enhancers	Primary B cells from cord blood	blood
5	chr8:60060000-60060600	Enhancers	Fetal Kidney	kidney
6	chr8:60060000-60060600	Enhancers	Osteobl	bone
7	chr8:60060200-60060600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:60060200-60060600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:60060200-60060600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:60060200-60060600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:60060200-60060600	Enhancers	Primary B cells from peripheral blood	blood
12	chr8:60060200-60060600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr8:60060400-60060600	Enhancers	Dnd41	blood
14	chr8:60060400-60060800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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