Variant report

Variant	rs12334681
Chromosome Location	chr8:60024737-60024738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60022747..60025488-chr8:60027934..60030642,2	K562	blood:
2	chr8:60018671..60020355-chr8:60023708..60026167,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10089655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924611	1.00[AMR][1000 genomes]
rs28662120	1.00[EUR][1000 genomes]
rs28723644	0.92[EUR][1000 genomes]
rs61183853	1.00[EUR][1000 genomes]
rs61746291	1.00[AMR][1000 genomes]
rs73248426	1.00[AMR][1000 genomes]
rs73248428	1.00[AMR][1000 genomes]
rs73256400	1.00[AMR][1000 genomes]
rs73258327	1.00[AMR][1000 genomes]
rs73684901	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60009800-60029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:60017000-60030000	Weak transcription	Gastric	stomach
3	chr8:60020400-60027000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:60020600-60025200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:60020600-60029400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:60020800-60025600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr8:60021000-60025000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:60021000-60026000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:60021000-60027600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:60021200-60026000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:60021200-60028200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:60021200-60028800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:60021200-60029000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:60021200-60029600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:60021400-60028200	Weak transcription	NH-A	brain
16	chr8:60021600-60027600	Weak transcription	Brain Angular Gyrus	brain
17	chr8:60021600-60027800	Weak transcription	Fetal Heart	heart
18	chr8:60022200-60025000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:60022200-60026000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:60022200-60026200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:60022600-60025200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:60022600-60025200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:60022800-60026200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:60022800-60027200	Weak transcription	Fetal Brain Female	brain
25	chr8:60023400-60027600	Weak transcription	Brain Germinal Matrix	brain
26	chr8:60023600-60028200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr8:60023600-60028800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr8:60023800-60025800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr8:60023800-60025800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:60024000-60025800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:60024000-60027400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:60024000-60027400	Weak transcription	Osteobl	bone
33	chr8:60024000-60027600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr8:60024000-60027600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr8:60024000-60028200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr8:60024000-60029800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr8:60024200-60025000	Enhancers	Primary T cells from cord blood	blood
38	chr8:60024200-60025400	Enhancers	Colon Smooth Muscle	Colon
39	chr8:60024200-60025800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:60024200-60025800	Weak transcription	Brain Anterior Caudate	brain
41	chr8:60024200-60027400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:60024200-60027800	Weak transcription	Fetal Stomach	stomach
43	chr8:60024200-60029600	Weak transcription	Fetal Kidney	kidney
44	chr8:60024400-60024800	Active TSS	Stomach Smooth Muscle	stomach
45	chr8:60024400-60025600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:60024400-60025600	Weak transcription	Fetal Brain Male	brain
47	chr8:60024400-60025600	Genic enhancers	Dnd41	blood
48	chr8:60024400-60025800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr8:60024400-60025800	Weak transcription	Thymus	Thymus
50	chr8:60024400-60026000	Weak transcription	H1 Cell Line	embryonic stem cell

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