Variant report

Variant	rs16924611
Chromosome Location	chr8:60022371-60022372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10089655	1.00[AMR][1000 genomes]
rs10110417	1.00[AMR][1000 genomes]
rs12334681	1.00[AMR][1000 genomes]
rs61746291	1.00[AMR][1000 genomes]
rs73248426	1.00[AMR][1000 genomes]
rs73248428	1.00[AMR][1000 genomes]
rs73256400	1.00[AMR][1000 genomes]
rs73258327	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60009800-60029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:60016000-60024000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:60017000-60030000	Weak transcription	Gastric	stomach
4	chr8:60018600-60022800	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:60019600-60023000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:60019600-60024000	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:60020000-60023600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr8:60020000-60024400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:60020400-60024400	Enhancers	Fetal Brain Male	brain
10	chr8:60020400-60027000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:60020600-60023200	Weak transcription	Osteobl	bone
12	chr8:60020600-60025200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:60020600-60029400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:60020800-60023200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:60020800-60024400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:60020800-60025600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr8:60021000-60022400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr8:60021000-60022600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:60021000-60023200	Weak transcription	Small Intestine	intestine
20	chr8:60021000-60023400	Weak transcription	Brain Anterior Caudate	brain
21	chr8:60021000-60023800	Weak transcription	Fetal Stomach	stomach
22	chr8:60021000-60024400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr8:60021000-60024400	Enhancers	Fetal Thymus	thymus
24	chr8:60021000-60025000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:60021000-60026000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:60021000-60027600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:60021200-60022400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr8:60021200-60024000	Weak transcription	Fetal Kidney	kidney
29	chr8:60021200-60024200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:60021200-60024400	Enhancers	Duodenum Mucosa	Duodenum
31	chr8:60021200-60026000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr8:60021200-60028200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:60021200-60028800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr8:60021200-60029000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:60021200-60029600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:60021400-60022600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:60021400-60022600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr8:60021400-60022800	Enhancers	Fetal Brain Female	brain
39	chr8:60021400-60023400	Enhancers	Brain Germinal Matrix	brain
40	chr8:60021400-60023600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr8:60021400-60024000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr8:60021400-60024000	Enhancers	Stomach Smooth Muscle	stomach
43	chr8:60021400-60028200	Weak transcription	NH-A	brain
44	chr8:60021600-60022600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr8:60021600-60023000	Enhancers	Primary T cells from cord blood	blood
46	chr8:60021600-60023200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr8:60021600-60023800	Weak transcription	Fetal Lung	lung
48	chr8:60021600-60024400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:60021600-60027600	Weak transcription	Brain Angular Gyrus	brain
50	chr8:60021600-60027800	Weak transcription	Fetal Heart	heart

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