Variant report

Variant	rs73258327
Chromosome Location	chr8:60070598-60070599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10089655	1.00[AMR][1000 genomes]
rs10110417	1.00[AMR][1000 genomes]
rs12334681	1.00[AMR][1000 genomes]
rs16924611	1.00[AMR][1000 genomes]
rs61746291	1.00[AMR][1000 genomes]
rs73248426	1.00[AMR][1000 genomes]
rs73248428	1.00[AMR][1000 genomes]
rs73256400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60069000-60070600	Enhancers	Primary B cells from cord blood	blood
2	chr8:60069600-60070600	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:60070400-60070800	Enhancers	Dnd41	blood
4	chr8:60070400-60071200	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links