Variant report

Variant	rs73685156
Chromosome Location	chr7:21533029-21533030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21336030..21338681-chr7:21532926..21535692,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10235230	0.80[AFR][1000 genomes]
rs10238881	0.80[AFR][1000 genomes]
rs10250796	0.84[AMR][1000 genomes]
rs10254858	0.80[AFR][1000 genomes]
rs10258911	0.80[AFR][1000 genomes]
rs10271650	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10274755	0.80[AFR][1000 genomes]
rs10275955	0.80[AFR][1000 genomes]
rs17144483	0.80[AMR][1000 genomes]
rs2189605	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282898	0.98[ASN][1000 genomes]
rs28419471	0.80[AFR][1000 genomes]
rs28580454	0.80[AFR][1000 genomes]
rs55840028	0.80[AFR][1000 genomes]
rs55879742	0.80[AFR][1000 genomes]
rs55908918	0.80[AFR][1000 genomes]
rs55940972	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57142662	0.80[AFR][1000 genomes]
rs57213984	0.80[AFR][1000 genomes]
rs58025439	0.80[AFR][1000 genomes]
rs61018707	0.93[ASN][1000 genomes]
rs61043546	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61301602	0.81[ASN][1000 genomes]
rs73682608	0.80[AFR][1000 genomes]
rs73685154	0.80[AFR][1000 genomes]
rs7792713	0.80[AFR][1000 genomes]
rs9791447	0.88[ASN][1000 genomes]
rs9791769	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21470400-21536400	Weak transcription	Esophagus	oesophagus
2	chr7:21487400-21557000	Weak transcription	Aorta	Aorta
3	chr7:21491000-21536400	Weak transcription	Left Ventricle	heart
4	chr7:21492200-21545200	Weak transcription	Small Intestine	intestine
5	chr7:21493000-21539000	Weak transcription	Spleen	Spleen
6	chr7:21498600-21543600	Weak transcription	Pancreas	Pancrea
7	chr7:21500000-21552800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:21505600-21536600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:21514000-21536400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:21516200-21556400	Weak transcription	Brain Substantia Nigra	brain
11	chr7:21517000-21556000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:21518200-21536400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:21518200-21536400	Weak transcription	Fetal Kidney	kidney
14	chr7:21520800-21552800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:21521200-21552600	Weak transcription	Brain Angular Gyrus	brain
16	chr7:21522000-21533800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr7:21526800-21536400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:21527000-21536200	Weak transcription	Psoas Muscle	Psoas
19	chr7:21529800-21534000	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr7:21529800-21539200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:21530000-21534400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr7:21530400-21534200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr7:21530600-21536600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr7:21530600-21540200	Weak transcription	Ovary	ovary
25	chr7:21530600-21541800	Weak transcription	Thymus	Thymus
26	chr7:21531400-21533800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
27	chr7:21531400-21540000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:21531400-21544400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr7:21531800-21533600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
30	chr7:21532000-21533200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr7:21532000-21534600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:21532200-21533200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr7:21532200-21537400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr7:21532400-21534000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr7:21532600-21533200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:21532600-21534000	ZNF genes & repeats	GM12878-XiMat	blood
37	chr7:21532800-21533200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr7:21532800-21536400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:21532800-21540000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:21532800-21540600	Weak transcription	Fetal Thymus	thymus
41	chr7:21532800-21542800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:21533000-21534200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:21533000-21534400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:21533000-21536200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:21533000-21536400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr7:21533000-21540400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links