Variant report

Variant	rs9791769
Chromosome Location	chr7:21476279-21476280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21475451..21478627-chr7:21492738..21495662,4	K562	blood:
2	chr7:21466062..21469694-chr7:21474540..21481280,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105866	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10271650	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2073534	0.85[CHB][hapmap];1.00[MEX][hapmap]
rs2073535	0.85[CHB][hapmap]
rs2189605	0.88[ASN][1000 genomes]
rs2282898	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2390538	0.91[CHD][hapmap]
rs55940972	0.86[ASN][1000 genomes]
rs61018707	0.91[ASN][1000 genomes]
rs61043546	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61301602	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73685156	0.88[ASN][1000 genomes]
rs9791447	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21468400-21490600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:21468400-21497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:21468600-21476600	Weak transcription	NHEK	skin
4	chr7:21468600-21478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:21468600-21488600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:21468600-21495600	Weak transcription	Fetal Intestine Large	intestine
7	chr7:21468800-21489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:21468800-21493600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:21469000-21483800	Weak transcription	Adipose Nuclei	Adipose
10	chr7:21470000-21488600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:21470000-21490400	Weak transcription	Fetal Kidney	kidney
12	chr7:21470000-21497800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:21470200-21488600	Weak transcription	Gastric	stomach
14	chr7:21470200-21490600	Weak transcription	Psoas Muscle	Psoas
15	chr7:21470200-21494400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:21470400-21477400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:21470400-21481000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:21470400-21488600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:21470400-21490600	Weak transcription	Pancreas	Pancrea
20	chr7:21470400-21494600	Weak transcription	Fetal Stomach	stomach
21	chr7:21470400-21516600	Weak transcription	Liver	Liver
22	chr7:21470400-21536400	Weak transcription	Esophagus	oesophagus
23	chr7:21470600-21477400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:21470600-21490800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr7:21471400-21480200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:21471600-21488400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:21471800-21484000	Weak transcription	HUVEC	blood vessel
28	chr7:21471800-21486600	Weak transcription	Aorta	Aorta
29	chr7:21472000-21483800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:21472000-21483800	Weak transcription	Fetal Lung	lung
31	chr7:21472000-21487200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr7:21472000-21488600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr7:21472000-21488800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:21472000-21489800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:21472000-21495200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr7:21472000-21495200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:21472200-21478600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr7:21472200-21482800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:21472400-21477000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr7:21472600-21476800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr7:21472600-21479000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:21472800-21478000	Weak transcription	K562	blood
43	chr7:21472800-21478600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:21472800-21479400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:21472800-21488200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:21472800-21488400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:21472800-21488600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr7:21472800-21490400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:21472800-21490400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:21472800-21490600	Weak transcription	Left Ventricle	heart

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