Variant report

Variant	rs73688467
Chromosome Location	chr8:85170953-85170954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55893605	1.00[AMR][1000 genomes]
rs58066601	1.00[AMR][1000 genomes]
rs73688469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688484	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688487	1.00[AMR][1000 genomes]
rs73688488	1.00[AMR][1000 genomes]
rs73688496	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85165400-85178000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:85166200-85171000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:85167400-85171000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:85170000-85171200	Weak transcription	Fetal Heart	heart
5	chr8:85170000-85178000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:85170000-85178400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:85170400-85172800	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links