Variant report

Variant	rs73691535
Chromosome Location	chr8:67320448-67320449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16932729	1.00[AMR][1000 genomes]
rs16932871	0.83[AFR][1000 genomes]
rs17383243	0.83[AFR][1000 genomes]
rs57303455	1.00[AMR][1000 genomes]
rs59180218	1.00[AMR][1000 genomes]
rs59891340	1.00[AMR][1000 genomes]
rs61201861	1.00[AMR][1000 genomes]
rs73691532	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691538	0.83[AFR][1000 genomes]
rs73691539	0.83[AFR][1000 genomes]
rs73691541	1.00[AMR][1000 genomes]
rs73691542	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67317400-67330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67319800-67320600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:67319800-67330400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:67320400-67321600	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links