Variant report

Variant	rs17383243
Chromosome Location	chr8:67330345-67330346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16932854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1961321	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56747323	1.00[AMR][1000 genomes]
rs57240176	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60232161	1.00[AMR][1000 genomes]
rs734619	1.00[AMR][1000 genomes]
rs73691533	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691535	0.83[AFR][1000 genomes]
rs73691538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9693831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67317400-67330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67319800-67330400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:67327400-67330400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:67328000-67330400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:67328000-67330400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:67328000-67330400	Weak transcription	NHDF-Ad	bronchial
7	chr8:67328000-67333400	Weak transcription	Osteobl	bone
8	chr8:67329000-67330800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:67329200-67331200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:67329400-67330800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:67329400-67330800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:67330000-67330800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr8:67330000-67330800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:67330000-67330800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:67330000-67331000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:67330200-67330800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:67330200-67330800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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