Variant report

Variant	rs73693254
Chromosome Location	chr7:38052580-38052581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56253086	1.00[AMR][1000 genomes]
rs73693252	1.00[AMR][1000 genomes]
rs73693255	1.00[AMR][1000 genomes]
rs73693258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38051600-38052600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:38051800-38052600	Weak transcription	HSMMtube	muscle
3	chr7:38052200-38053000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:38052400-38052800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:38052400-38052800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:38052400-38052800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:38052400-38059600	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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