Variant report

Variant	rs73693255
Chromosome Location	chr7:38060515-38060516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56253086	1.00[AMR][1000 genomes]
rs73693248	0.83[AFR][1000 genomes]
rs73693252	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693254	1.00[AMR][1000 genomes]
rs73693258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38053200-38062600	Weak transcription	Lung	lung
2	chr7:38058600-38061200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:38059200-38061200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:38059400-38060600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:38059600-38061000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:38060000-38067400	Weak transcription	HSMM	muscle
7	chr7:38060400-38060600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:38060400-38060600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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