Variant report

Variant	rs73693434
Chromosome Location	chr8:66738414-66738415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66737791..66740122-chr8:66753290..66754804,2	K562	blood:
2	chr8:66737036..66739484-chr8:66752919..66754765,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARMC1-5	chr8:66736265-66738758	NONHSAT127001

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56256477	1.00[AMR][1000 genomes]
rs56665861	1.00[AMR][1000 genomes]
rs57152556	1.00[AMR][1000 genomes]
rs57973039	1.00[AMR][1000 genomes]
rs60715207	1.00[AMR][1000 genomes]
rs73690884	1.00[AMR][1000 genomes]
rs73690896	1.00[AMR][1000 genomes]
rs73693412	1.00[AMR][1000 genomes]
rs73693414	1.00[AMR][1000 genomes]
rs73693415	1.00[AMR][1000 genomes]
rs73693417	1.00[AMR][1000 genomes]
rs73693421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693431	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7813923	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66719400-66738600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:66719400-66750000	Weak transcription	Hela-S3	cervix
3	chr8:66720400-66744800	Weak transcription	NHEK	skin
4	chr8:66725200-66742000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:66725200-66747000	Weak transcription	NHDF-Ad	bronchial
6	chr8:66725400-66742000	Weak transcription	HMEC	breast
7	chr8:66725400-66751200	Weak transcription	Fetal Heart	heart
8	chr8:66729000-66744800	Weak transcription	Gastric	stomach
9	chr8:66729400-66744800	Weak transcription	Spleen	Spleen
10	chr8:66729400-66749400	Weak transcription	Fetal Brain Male	brain
11	chr8:66730000-66741400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:66730000-66741600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr8:66731000-66752600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:66731400-66741000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:66731600-66740000	Weak transcription	A549	lung
16	chr8:66731600-66741400	Weak transcription	Fetal Stomach	stomach
17	chr8:66731600-66752600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:66731800-66752600	Weak transcription	Adipose Nuclei	Adipose
19	chr8:66732200-66741400	Weak transcription	Fetal Intestine Large	intestine
20	chr8:66732400-66739200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:66732400-66745000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:66732400-66745000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr8:66732600-66738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:66732600-66739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:66732600-66751000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:66732600-66751000	Weak transcription	Fetal Lung	lung
27	chr8:66733000-66738600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr8:66733000-66752000	Weak transcription	Fetal Intestine Small	intestine
29	chr8:66733400-66743800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:66734200-66738600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr8:66734200-66742800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr8:66734400-66740200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr8:66734800-66740600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr8:66734800-66742000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:66734800-66749000	Weak transcription	Small Intestine	intestine
36	chr8:66734800-66752600	Weak transcription	Left Ventricle	heart
37	chr8:66735000-66746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:66735000-66746600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:66735200-66741800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr8:66735400-66738600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:66736000-66740200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:66736200-66741800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr8:66736400-66739600	Strong transcription	Fetal Thymus	thymus
44	chr8:66736600-66741000	ZNF genes & repeats	GM12878-XiMat	blood
45	chr8:66737000-66738600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr8:66737000-66739000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:66737000-66742000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:66737400-66739200	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr8:66737600-66738600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr8:66737600-66739400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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