Variant report
| Variant | rs73696305 |
|---|---|
| Chromosome Location | chr8:90409967-90409968 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:90409469..90410421-chr8:90628822..90629675,4 | MCF-7 | breast: | |
| 2 | chr8:90265438..90266169-chr8:90409519..90410283,2 | MCF-7 | breast: | |
| 3 | chr8:90409684..90410477-chr8:90701050..90701985,2 | MCF-7 | breast: | |
| 4 | chr8:90409100..90410437-chr8:90628570..90629840,8 | MCF-7 | breast: | |
| 5 | chr8:90404700..90408275-chr8:90408391..90410365,3 | MCF-7 | breast: | |
| 6 | chr8:90402877..90404384-chr8:90409291..90411410,2 | MCF-7 | breast: | |
| 7 | chr8:90409960..90412436-chr8:90413000..90414857,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251136 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs58524292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60688063 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61524230 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73694782 | 1.00[AMR][1000 genomes] |
| rs73696304 | 1.00[AMR][1000 genomes] |
| rs73696309 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73696313 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv465735 | chr8:89760311-90729507 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv611714 | chr8:89760311-90729507 | Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024956 | chr8:90104423-90459539 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv539671 | chr8:90104423-90459539 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv2761173 | chr8:90404592-90592009 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:90394000-90414800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
