Variant report

Variant	rs73696579
Chromosome Location	chr8:102938186-102938187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11997933	0.87[AFR][1000 genomes]
rs60240355	0.87[AFR][1000 genomes]
rs60942694	0.87[AFR][1000 genomes]
rs73696581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73696582	0.87[AFR][1000 genomes]
rs73696583	0.87[AFR][1000 genomes]
rs73696584	0.87[AFR][1000 genomes]
rs7839949	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102915200-102938800	Weak transcription	Aorta	Aorta
2	chr8:102916200-102942600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:102920600-102956600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:102921200-102938200	Weak transcription	Ovary	ovary
5	chr8:102932400-102938200	Weak transcription	Lung	lung
6	chr8:102934200-102939600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:102936200-102939000	Enhancers	Psoas Muscle	Psoas
8	chr8:102936200-102940000	Enhancers	Left Ventricle	heart
9	chr8:102936200-102940200	Enhancers	Fetal Muscle Leg	muscle
10	chr8:102936600-102939600	Enhancers	Fetal Heart	heart
11	chr8:102936800-102940800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr8:102937200-102938200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:102937400-102939200	Weak transcription	Right Ventricle	heart
14	chr8:102937600-102943000	Weak transcription	Fetal Brain Female	brain
15	chr8:102937800-102939800	Enhancers	Stomach Smooth Muscle	stomach
16	chr8:102937800-102942600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:102937800-102943000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:102938000-102940000	Enhancers	HSMMtube	muscle
19	chr8:102938000-102940600	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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