Variant report

Variant	rs73696582
Chromosome Location	chr8:102942571-102942572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102942428..102944500-chr8:102955135..102957986,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11986985	0.86[EUR][1000 genomes]
rs11997933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868433	0.83[EUR][1000 genomes]
rs16868457	0.83[EUR][1000 genomes]
rs56731949	1.00[EUR][1000 genomes]
rs58133251	1.00[EUR][1000 genomes]
rs58912743	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60240355	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60942694	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61308131	0.83[EUR][1000 genomes]
rs6998151	0.83[EUR][1000 genomes]
rs6998300	0.83[EUR][1000 genomes]
rs73277021	0.83[EUR][1000 genomes]
rs73280889	0.83[EUR][1000 genomes]
rs73280895	0.83[EUR][1000 genomes]
rs73290537	1.00[EUR][1000 genomes]
rs73696511	0.83[EUR][1000 genomes]
rs73696579	0.87[AFR][1000 genomes]
rs73696581	0.85[AFR][1000 genomes]
rs73696583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839949	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102916200-102942600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:102920600-102956600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:102937600-102943000	Weak transcription	Fetal Brain Female	brain
4	chr8:102937800-102942600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:102937800-102943000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:102939000-102942600	Weak transcription	Psoas Muscle	Psoas
7	chr8:102939000-102944200	Weak transcription	Esophagus	oesophagus
8	chr8:102939600-102942800	Weak transcription	Right Atrium	heart
9	chr8:102939800-102942800	Weak transcription	Right Ventricle	heart
10	chr8:102939800-102944200	Weak transcription	Lung	lung
11	chr8:102940000-102942600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:102940000-102942800	Weak transcription	Left Ventricle	heart
13	chr8:102940200-102942600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:102940200-102942600	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:102940200-102942800	Weak transcription	Aorta	Aorta
16	chr8:102940400-102942800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:102940600-102942600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr8:102940800-102942600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:102940800-102942600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:102941200-102942800	Weak transcription	Fetal Heart	heart
21	chr8:102941400-102942600	Weak transcription	Ovary	ovary

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