Variant report

Variant	rs73696511
Chromosome Location	chr8:102854626-102854627
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102852494..102855006-chr8:102859200..102861225,2	MCF-7	breast:
2	chr8:102847609..102850390-chr8:102853581..102855226,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238372	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11986985	1.00[ASN][1000 genomes]
rs16868433	1.00[EUR][1000 genomes]
rs16868457	1.00[EUR][1000 genomes]
rs56731949	0.83[EUR][1000 genomes]
rs58133251	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58912743	0.83[EUR][1000 genomes]
rs59182464	1.00[ASN][1000 genomes]
rs60240355	0.83[EUR][1000 genomes]
rs60942694	0.83[EUR][1000 genomes]
rs61308131	1.00[EUR][1000 genomes]
rs6998151	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277021	1.00[EUR][1000 genomes]
rs73280889	1.00[EUR][1000 genomes]
rs73280895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290537	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696582	0.83[EUR][1000 genomes]
rs73696583	0.83[EUR][1000 genomes]
rs73696584	0.83[EUR][1000 genomes]
rs7839949	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102845400-102862000	Weak transcription	Left Ventricle	heart
3	chr8:102845600-102855000	Weak transcription	Aorta	Aorta
4	chr8:102846800-102866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:102852200-102854800	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:102853800-102854800	Weak transcription	Psoas Muscle	Psoas
7	chr8:102854200-102855000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:102854400-102854800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:102854600-102855600	Flanking Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links