Variant report

Variant	rs16868433
Chromosome Location	chr8:102798354-102798355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102791686..102794571-chr8:102795797..102798872,3	MCF-7	breast:
2	chr8:102793506..102795594-chr8:102796708..102798852,2	K562	blood:
3	chr8:102796504..102798716-chr8:102801614..102804455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

rs_ID	r²[population]
rs16868447	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16868457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56731949	0.83[EUR][1000 genomes]
rs58133251	0.83[EUR][1000 genomes]
rs58912743	0.83[EUR][1000 genomes]
rs60240355	0.83[EUR][1000 genomes]
rs60942694	0.83[EUR][1000 genomes]
rs61308131	1.00[EUR][1000 genomes]
rs6987345	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs6998151	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6998300	1.00[EUR][1000 genomes]
rs6999759	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs73277021	1.00[EUR][1000 genomes]
rs73280889	1.00[EUR][1000 genomes]
rs73280895	1.00[EUR][1000 genomes]
rs73290537	0.83[EUR][1000 genomes]
rs73696511	1.00[EUR][1000 genomes]
rs73696582	0.83[EUR][1000 genomes]
rs73696583	0.83[EUR][1000 genomes]
rs73696584	0.83[EUR][1000 genomes]
rs7839949	0.83[EUR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:102780200-102799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102781600-102801000	Weak transcription	Liver	Liver
5	chr8:102783000-102799600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:102783600-102799400	Weak transcription	Adipose Nuclei	Adipose
7	chr8:102783600-102800800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:102784000-102799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:102784200-102802200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:102787000-102798400	Weak transcription	Aorta	Aorta
11	chr8:102787400-102802400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:102787800-102802600	Weak transcription	Right Ventricle	heart
13	chr8:102790600-102802400	Weak transcription	Left Ventricle	heart
14	chr8:102790600-102802600	Weak transcription	Psoas Muscle	Psoas
15	chr8:102795200-102803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:102795600-102799000	Genic enhancers	Fetal Muscle Leg	muscle
17	chr8:102796200-102799200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:102796400-102803000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:102796600-102800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:102796800-102802400	Weak transcription	NHDF-Ad	bronchial
21	chr8:102797000-102799600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:102797800-102798600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:102797800-102799400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:102798000-102798400	Enhancers	NHEK	skin
25	chr8:102798000-102798600	Enhancers	Fetal Stomach	stomach
26	chr8:102798000-102798600	Enhancers	Pancreas	Pancrea
27	chr8:102798000-102798600	Enhancers	Right Atrium	heart
28	chr8:102798000-102798800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:102798000-102799000	Enhancers	Ovary	ovary
30	chr8:102798000-102799400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:102798200-102798600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:102798200-102798600	Genic enhancers	GM12878-XiMat	blood
33	chr8:102798200-102800000	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr8:102798200-102800200	Enhancers	Fetal Lung	lung

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