Variant report

Variant	rs6998300
Chromosome Location	chr8:102871563-102871564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102864772..102866695-chr8:102870312..102872200,2	MCF-7	breast:
2	chr8:102859142..102861704-chr8:102870345..102872066,2	K562	blood:

Variant related genes	Relation type
ENSG00000238372	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11986985	1.00[ASN][1000 genomes]
rs16868433	1.00[EUR][1000 genomes]
rs16868457	1.00[EUR][1000 genomes]
rs56731949	0.83[EUR][1000 genomes]
rs58133251	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58912743	0.83[EUR][1000 genomes]
rs59182464	1.00[ASN][1000 genomes]
rs60240355	0.83[EUR][1000 genomes]
rs60942694	0.83[EUR][1000 genomes]
rs61308131	1.00[EUR][1000 genomes]
rs6998151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277021	1.00[EUR][1000 genomes]
rs73280889	1.00[EUR][1000 genomes]
rs73280895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290537	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696582	0.83[EUR][1000 genomes]
rs73696583	0.83[EUR][1000 genomes]
rs73696584	0.83[EUR][1000 genomes]
rs7839949	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1030076	chr8:102866179-102896458	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102862800-102876000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:102866600-102876000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:102867400-102872400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:102867600-102872400	Weak transcription	NHDF-Ad	bronchial
5	chr8:102869200-102880200	Weak transcription	Aorta	Aorta
6	chr8:102870000-102891200	Weak transcription	Ovary	ovary
7	chr8:102870200-102872200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:102870600-102879000	Weak transcription	Small Intestine	intestine
9	chr8:102871000-102875200	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:102871000-102880400	Weak transcription	Psoas Muscle	Psoas
11	chr8:102871000-102880800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:102871200-102876000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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