Variant report

Variant	rs73697448
Chromosome Location	chr8:105430567-105430568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104762301..104762819-chr8:105430358..105430902,2	MCF-7	breast:
2	chr8:104776128..104776788-chr8:105430212..105430820,2	MCF-7	breast:
3	chr8:104807405..104809550-chr8:105429607..105430935,14	MCF-7	breast:
4	chr8:104808731..104809547-chr8:105430013..105430789,3	MCF-7	breast:
5	chr8:105337199..105338343-chr8:105429794..105430888,7	K562	blood:
6	chr8:105265326..105266631-chr8:105429975..105430855,7	MCF-7	breast:
7	chr8:105337189..105338874-chr8:105429884..105430858,12	MCF-7	breast:
8	chr2:136919848..136920653-chr8:105430002..105430578,2	MCF-7	breast:
9	chr8:105266002..105266698-chr8:105429985..105430918,2	MCF-7	breast:
10	chr8:104807426..104808073-chr8:105429965..105430856,2	MCF-7	breast:
11	chr8:105142189..105143073-chr8:105430071..105430902,5	MCF-7	breast:
12	chr8:104807813..104808968-chr8:105429965..105430866,4	K562	blood:
13	chr8:105430384..105431012-chr8:105454693..105455216,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11997039	1.00[AMR][1000 genomes]
rs58509923	1.00[AMR][1000 genomes]
rs6984745	1.00[AMR][1000 genomes]
rs73697472	1.00[AMR][1000 genomes]
rs7825427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105428400-105430600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:105428600-105431400	Genic enhancers	Liver	Liver
3	chr8:105429000-105430600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:105430200-105430600	Enhancers	Fetal Thymus	thymus
5	chr8:105430200-105433200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:105430400-105430600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr8:105430400-105431000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:105430400-105431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:105430400-105431000	Enhancers	Fetal Brain Male	brain
10	chr8:105430400-105432400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:105430400-105435200	Weak transcription	Brain Germinal Matrix	brain
12	chr8:105430400-105435200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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