Variant report

Variant	rs7825427
Chromosome Location	chr8:105456597-105456598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11997039	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs4305867	1.00[MEX][hapmap]
rs58509923	1.00[AMR][1000 genomes]
rs61491060	1.00[AMR][1000 genomes]
rs6468928	1.00[MEX][hapmap]
rs6984745	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs6998025	1.00[MEX][hapmap];0.82[YRI][hapmap]
rs73697448	1.00[AMR][1000 genomes]
rs73697472	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105450600-105458800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:105452000-105459000	Strong transcription	Liver	Liver
3	chr8:105454800-105458200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:105454800-105458200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:105455000-105458200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:105455000-105458400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:105455000-105462600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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