Variant report

Variant	rs73700027
Chromosome Location	chr8:108208498-108208499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108203846..108205838-chr8:108206200..108208879,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57822881	1.00[AMR][1000 genomes]
rs58544309	1.00[AMR][1000 genomes]
rs60382703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700019	0.97[AFR][1000 genomes]
rs73700026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700030	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700031	1.00[AMR][1000 genomes]
rs73700034	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700046	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700052	1.00[AMR][1000 genomes]
rs73700060	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700066	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1026763	chr8:108155029-108263914	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv968523	chr8:108201683-108211510	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108207000-108208600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:108207200-108208800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:108207400-108208800	Enhancers	Fetal Lung	lung
4	chr8:108207400-108208800	Enhancers	HUVEC	blood vessel
5	chr8:108207400-108208800	Enhancers	Osteobl	bone
6	chr8:108207600-108208600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:108207600-108208600	Enhancers	Fetal Kidney	kidney
8	chr8:108207600-108208600	Enhancers	NHLF	lung
9	chr8:108207600-108208800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:108207600-108208800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:108207600-108208800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:108207600-108208800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:108207600-108209400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:108207800-108208800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr8:108207800-108209600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:108208000-108208600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:108208000-108208600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:108208000-108208800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:108208200-108208600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:108208200-108208600	Enhancers	Fetal Thymus	thymus
21	chr8:108208200-108208800	Enhancers	Fetal Muscle Leg	muscle
22	chr8:108208200-108208800	Enhancers	Stomach Smooth Muscle	stomach
23	chr8:108208200-108208800	Enhancers	Dnd41	blood
24	chr8:108208200-108208800	Enhancers	HSMM	muscle
25	chr8:108208200-108209000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr8:108208200-108209200	Enhancers	Adipose Nuclei	Adipose
27	chr8:108208200-108209800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:108208400-108208800	Enhancers	Aorta	Aorta

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