Variant report

Variant	rs73700839
Chromosome Location	chr7:67523274-67523275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2533475	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2533479	0.83[EUR][1000 genomes]
rs2642156	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2903500	0.82[EUR][1000 genomes]
rs4333470	0.82[EUR][1000 genomes]
rs4718700	0.92[ASN][1000 genomes]
rs56182598	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144129	0.99[ASN][1000 genomes]
rs7809564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs887419	0.95[EUR][1000 genomes]
rs887420	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs887421	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018102	chr7:67494709-67526914	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67522800-67523600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr7:67522800-67523600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:67522800-67523800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:67522800-67523800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:67522800-67523800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:67522800-67523800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:67522800-67523800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:67523000-67523400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:67523000-67523800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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