Variant report

Variant	rs73705599
Chromosome Location	chr8:127849874-127849875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127836927..127839136-chr8:127848377..127851052,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73705598	0.88[AFR][1000 genomes]
rs73707704	1.00[AFR][1000 genomes]
rs73707708	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127846200-127851600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:127846600-127851600	Weak transcription	Stomach Mucosa	stomach
3	chr8:127846600-127858200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:127846800-127851000	Weak transcription	Adipose Nuclei	Adipose
5	chr8:127846800-127851200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:127846800-127851400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:127846800-127851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:127846800-127851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:127846800-127851400	Weak transcription	HMEC	breast
10	chr8:127846800-127851800	Weak transcription	Gastric	stomach
11	chr8:127846800-127851800	Weak transcription	NHEK	skin
12	chr8:127846800-127852200	Weak transcription	Fetal Heart	heart
13	chr8:127846800-127854000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr8:127846800-127857200	Weak transcription	Fetal Kidney	kidney
15	chr8:127847000-127850000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:127847000-127850800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:127847000-127851400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:127847000-127854400	Weak transcription	Placenta	Placenta
19	chr8:127847200-127850200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:127847600-127850000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:127847600-127851400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:127847600-127857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:127847600-127860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:127847800-127850000	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:127848000-127850400	Weak transcription	Fetal Lung	lung
26	chr8:127848000-127852600	Weak transcription	NHLF	lung
27	chr8:127848200-127852600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:127848400-127851000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:127849600-127856600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:127849800-127850200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:127849800-127850200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr8:127849800-127850400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:127849800-127853200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links