Variant report
| Variant | rs73706314 |
|---|---|
| Chromosome Location | chr8:112248984-112248985 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:13)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:13 , 50 per page) page:
1
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:112248673..112250469-chr8:112250523..112252555,2 | MCF-7 | breast: | |
| 2 | chr8:112248686..112249491-chr8:121617700..121618578,2 | MCF-7 | breast: | |
| 3 | chr8:112248509..112249151-chr8:121951139..121951901,3 | MCF-7 | breast: | |
| 4 | chr8:112248482..112249338-chr8:112258709..112259294,2 | MCF-7 | breast: | |
| 5 | chr18:8609099..8610030-chr8:112248746..112249278,2 | MCF-7 | breast: | |
| 6 | chr8:112166075..112166697-chr8:112248498..112249074,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253103 | TF binding region |
| ENSG00000206418 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs59305568 | 0.91[AFR][1000 genomes] |
| rs73703833 | 0.91[AFR][1000 genomes] |
| rs73705836 | 0.91[AFR][1000 genomes] |
| rs73706313 | 1.00[AFR][1000 genomes] |
| rs73706315 | 1.00[AFR][1000 genomes] |
| rs73706316 | 1.00[AFR][1000 genomes] |
| rs73706317 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030494 | chr8:111779352-112421812 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv891311 | chr8:112088322-112604086 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034184 | chr8:112171949-112274721 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
