Variant report

Variant	rs73706920
Chromosome Location	chr7:87399437-87399438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:87327238..87329747-chr7:87397840..87399665,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105784	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs28381711	1.00[AMR][1000 genomes]
rs28381755	1.00[AMR][1000 genomes]
rs55787809	1.00[AMR][1000 genomes]
rs55789004	1.00[AMR][1000 genomes]
rs55843951	1.00[AMR][1000 genomes]
rs55990608	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56208559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56225435	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56397035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58093582	1.00[AMR][1000 genomes]
rs58101885	1.00[AMR][1000 genomes]
rs59075963	1.00[AFR][1000 genomes]
rs59091064	1.00[AMR][1000 genomes]
rs59696208	0.84[AFR][1000 genomes]
rs61056962	0.84[AFR][1000 genomes]
rs61232411	0.81[AFR][1000 genomes]
rs6950539	0.84[AFR][1000 genomes]
rs6962731	1.00[AMR][1000 genomes]
rs6974534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705278	1.00[AMR][1000 genomes]
rs73706904	1.00[AMR][1000 genomes]
rs73706908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706911	1.00[AMR][1000 genomes]
rs73706913	1.00[AMR][1000 genomes]
rs73706917	1.00[AMR][1000 genomes]
rs73706919	1.00[AMR][1000 genomes]
rs73706921	1.00[AMR][1000 genomes]
rs73706923	1.00[AMR][1000 genomes]
rs73706928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706936	1.00[AFR][1000 genomes]
rs73706937	0.81[AFR][1000 genomes]
rs73706943	0.80[AFR][1000 genomes]
rs7786524	1.00[AMR][1000 genomes]
rs7801454	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv888695	chr7:87328502-87430669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv528078	chr7:87397345-87418861	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87397000-87401000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:87397400-87406600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:87397800-87401400	Weak transcription	Liver	Liver
4	chr7:87398000-87400000	Weak transcription	Pancreas	Pancrea
5	chr7:87398000-87402600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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