Variant report

Variant	rs7801454
Chromosome Location	chr7:87501134-87501135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr7:87500661-87501815	U2OS	brain:	n/a	n/a
2	POLR2A	chr7:87499581-87501619	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:87498692..87501770-chr7:87503164..87507238,6	MCF-7	breast:
2	chr7:87499423..87502293-chr7:87503771..87507014,4	MCF-7	breast:
3	chr7:87498971..87501202-chr7:87562858..87565069,2	MCF-7	breast:

Variant related genes	Relation type
DBF4	TF binding region
ENSG00000008277	Chromatin interaction
ENSG00000006634	Chromatin interaction
ENSG00000075303	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55990608	0.80[AFR][1000 genomes]
rs56208559	0.88[AFR][1000 genomes]
rs56225435	0.80[AFR][1000 genomes]
rs56397035	0.88[AFR][1000 genomes]
rs57593184	1.00[AMR][1000 genomes]
rs59075963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965458	1.00[AMR][1000 genomes]
rs60521777	1.00[AMR][1000 genomes]
rs61056962	1.00[AMR][1000 genomes]
rs61232411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950539	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6974534	0.80[AFR][1000 genomes]
rs73706908	0.88[AFR][1000 genomes]
rs73706920	0.88[AFR][1000 genomes]
rs73706928	0.88[AFR][1000 genomes]
rs73706931	1.00[AMR][1000 genomes]
rs73706933	1.00[AMR][1000 genomes]
rs73706934	1.00[AMR][1000 genomes]
rs73706936	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706937	1.00[AMR][1000 genomes]
rs73706938	1.00[AMR][1000 genomes]
rs73706939	1.00[AMR][1000 genomes]
rs73706943	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706945	1.00[AMR][1000 genomes]
rs73706946	1.00[AMR][1000 genomes]
rs73706947	1.00[AMR][1000 genomes]
rs73706949	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87481000-87503800	Weak transcription	NH-A	brain
2	chr7:87481200-87504000	Weak transcription	Osteobl	bone
3	chr7:87482200-87503200	Weak transcription	HMEC	breast
4	chr7:87486000-87504400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:87486400-87504800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:87487000-87501800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:87487400-87503800	Weak transcription	HUVEC	blood vessel
8	chr7:87488000-87503400	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:87488200-87504600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:87491400-87503600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:87493000-87502600	ZNF genes & repeats	GM12878-XiMat	blood
12	chr7:87494800-87501200	ZNF genes & repeats	Fetal Muscle Leg	muscle
13	chr7:87495400-87502600	ZNF genes & repeats	Dnd41	blood
14	chr7:87495800-87503400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:87496000-87503000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:87496000-87504000	Weak transcription	Small Intestine	intestine
17	chr7:87496400-87504600	Weak transcription	Psoas Muscle	Psoas
18	chr7:87497400-87503600	Weak transcription	Fetal Kidney	kidney
19	chr7:87498000-87503000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr7:87498800-87503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:87499000-87502200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:87499200-87502000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr7:87499600-87501200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr7:87499600-87502000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr7:87499600-87502200	ZNF genes & repeats	K562	blood
26	chr7:87499800-87501200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:87499800-87502000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chr7:87500200-87501400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:87500200-87502800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:87500200-87504400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:87500400-87501200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:87500400-87501400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr7:87500400-87503000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr7:87500400-87503600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:87500400-87503800	Weak transcription	Liver	Liver
36	chr7:87500600-87502800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:87500600-87502800	Weak transcription	Pancreas	Pancrea
38	chr7:87500600-87503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:87500600-87503000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:87500600-87503200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr7:87500600-87503400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:87500600-87503400	Weak transcription	A549	lung
43	chr7:87500600-87503600	Weak transcription	HSMM	muscle
44	chr7:87500600-87503600	Weak transcription	NHLF	lung
45	chr7:87500600-87504000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:87500600-87504400	Weak transcription	Colonic Mucosa	Colon
47	chr7:87500600-87504600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr7:87500600-87504600	Weak transcription	Lung	lung
49	chr7:87500600-87505000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:87500600-87505000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links