Variant report

Variant	rs73710435
Chromosome Location	chr8:130688885-130688886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10505543	1.00[EUR][1000 genomes]
rs16904091	1.00[EUR][1000 genomes]
rs16904096	1.00[EUR][1000 genomes]
rs16904100	1.00[EUR][1000 genomes]
rs16904107	1.00[EUR][1000 genomes]
rs16904111	1.00[EUR][1000 genomes]
rs2395929	1.00[EUR][1000 genomes]
rs28504100	1.00[EUR][1000 genomes]
rs28649960	1.00[EUR][1000 genomes]
rs56091718	1.00[EUR][1000 genomes]
rs56150381	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58703070	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6986342	1.00[EUR][1000 genomes]
rs73710412	1.00[EUR][1000 genomes]
rs73710415	1.00[EUR][1000 genomes]
rs73710420	1.00[EUR][1000 genomes]
rs73710432	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73710434	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130682600-130694000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:130686000-130689200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:130686000-130691200	Weak transcription	Fetal Lung	lung
4	chr8:130687600-130689400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr8:130688200-130689400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:130688200-130693800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:130688400-130689200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr8:130688400-130689400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr8:130688600-130689200	Enhancers	Fetal Muscle Leg	muscle
10	chr8:130688600-130689400	Enhancers	Dnd41	blood
11	chr8:130688600-130689400	Enhancers	HMEC	breast
12	chr8:130688600-130689400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr8:130688600-130689600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:130688600-130689600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:130688800-130689200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:130688800-130689200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr8:130688800-130689400	Enhancers	Primary B cells from peripheral blood	blood
18	chr8:130688800-130689400	ZNF genes & repeats	K562	blood
19	chr8:130688800-130691200	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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